PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002786
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NF-YC
Protein Properties Length: 314aa    MW: 35486.7 Da    PI: 6.9317
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-15100PU_refplantGDBView CDS
gnl|UG|Pta#S26628917PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC177.21.5e-55751781101
      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 
                ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+filelt+rsw+haeenkrrtl+k+diaaa+trtdifdflvdivp
  Pta002786  75 QLHMFWAFQmqeIEQVSDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTMRSWIHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVP 174
                799***98866789************************************************************************************** PP

      NF-YC  98 rdel 101
                rd+l
  Pta002786 175 RDDL 178
                **87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.03E-3563169IPR009072Histone-fold
Gene3DG3DSA:1.10.20.106.7E-3889161IPR009072Histone-fold
PfamPF008084.7E-2197160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDHHNHHQHH PSSSSGGAAP QGMSQGYPGG AAAQPSPVGM QGQAGQIVQT GLHQSGGQQA  60
FHHHHMQQQQ QQQQQLHMFW AFQMQEIEQV SDFKNHQLPL ARIKKIMKAD EDVRMISAEA  120
PVLFAKACEM FILELTMRSW IHAEENKRRT LQKNDIAAAI TRTDIFDFLV DIVPRDDLKE  180
EGLGLGFARG GVTPEGSFYY PPPSMPQSPH QQGMMGSSSI MMGRPVPLQM DPSAMYMHQQ  240
QQPRPYGMPT HPHQPMWQHP HHPHQQQQQQ QMPDGQSYGH PHQQQQQHMP DGQPYGQQQM  300
TDEHSYGTSP RSAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C3e-437617519119HapE
4g92_C3e-437617519119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147153RRTLQKN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.148170.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582162.17e-76PREDICTED: nuclear transcription factor Y subunit C-1
SwissprotQ9SMP03e-74NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA9NKD31e-156A9NKD3_PICSI; Putative uncharacterized protein
STRINGSolyc06g072040.1.12e-74(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-63nuclear factor Y, subunit C2